• Processing raw 10X Genomics single-cell RNA-seq data

    This tutorial describes how to use cellranger, a command-line tool for processing single-cell RNA-seq data generated from the 10X Genomics platform. cellranger is built by 10X Genomics specifically to use with data generated from their platform. here

  • Single-cell transcriptomics essentials

    This tutorial covers single-cell exploratory data analysis that is used in the Swarup lab’s research. Since single-cell data analysis are constantly evolving, we hope to update this tutorial in future. here

  • Batch correction and integration of single-cell datasets

    This tutorial covers several batch correction and integration techniques for single-cell RNA-seq data. here