Getting started
Installing Operon on macOS
Download the app, drag it into Applications, and walk through the first-launch setup wizard. Covers both Apple Silicon and Intel builds, plus automatic dependency installation.
Remote & HPC
Connecting to a Remote Server
Set up an SSH connection profile to a remote server or HPC cluster. Covers hostname, port, SSH keys, password authentication, and Duo / MFA logins.
Remote & HPC
Installing Claude on a Remote Server
Install Claude Code on your HPC login node so that agent and plan modes run on compute resources instead of your laptop. Shell detection, curl install, and verification.
Analysis
Single-cell RNA-seq with Scanpy
Run a basic scRNA-seq analysis end-to-end using Scanpy inside Operon — loading data, QC filtering, normalization, clustering, and UMAP — all driven by the chat panel.
Analysis
Cell Segmentation with CellPose
Use CellPose within Operon to segment cells from microscopy images. Model selection, input preparation, running segmentation, and inspecting the output masks.
Want to see more tutorials?
Got a workflow or feature you'd like us to cover? Open an issue on GitHub and we'll add it to the queue.